These cottage cheese blueberry muffins are soft, juicy, and sneakily packed with protein. Perfect anytime, you can eat them for breakfast, toss them in a lunchbox, or snack on them between workouts, without the sugar crash. Moist, fluffy, and full of blueberry flavor, they’re a solid win for anyone who likes their snacks to actually do something.

A muffin tray with eleven cottage cheese blueberry muffins in paper liners and one slot holding a bowl filled with fresh blueberries; perfect for showcasing your favorite Blueberry Muffins or trying a new muffin recipe. An extra bowl of blueberries is nearby.

Protein: 7 grams per muffin

The protein in these muffins comes mainly from cottage cheeseegg whites, and whole eggs. I like using my immersion blender to mix the wet ingredients. It makes everything super smooth and gives the muffins a nice, even texture. I always keep a few in the fridge and a few in the freezer so they’re ready to go at all times. Both versions held up perfectly, and I was honestly surprised how soft they stayed even after a few days.

Why you will love this recipe

  • High in protein: Thanks to cottage cheese, eggs, and egg whites.
  • Naturally sweetened: Uses honey or maple syrup instead of refined sugar.
  • Great texture: Soft, moist, and holds together well.
  • Meal prep friendly: Freezes beautifully and stays fresh for days.
  • Flexible ingredients: Works with fresh or frozen blueberries.
  • Versatile snack: Ideal for breakfast, mid-day bites, or post-workout fuel.

Key ingredients and substitutions

  • Whole wheat flour: Adds fiber and structure. You can swap with all-purpose flour or a 1:1 gluten-free blend.
  • Baking powder & baking soda: Help the muffins rise and stay fluffy. Don’t skip them!
  • Salt & cinnamon: Bring out the flavors and add a hint of warmth.
  • Cottage cheese: The secret to the protein boost and super moist texture. Use full-fat or low-fat, both work.
  • Honey or maple syrup: Natural sweeteners that keep things lightly sweet.
  • Eggs + egg whites: Help bind the batter and add even more protein.
  • Vanilla extract: For flavor and balance.
  • Blueberries: Use fresh blueberries or thawed frozen berries. Don’t stir too much or the color will bleed!

How to make cottage cheese blueberry muffins

  1. Preheat the oven: Set it to 400°F (200°C) and prep your muffin pan with liners or nonstick spray.
  2. Mix dry ingredients: In a medium or large mixing bowl, whisk together whole wheat flour, baking powder, baking soda, salt, and cinnamon.
  3. Blend wet ingredients: In a blender or jar with an immersion blender, mix cottage cheese, honey or maple syrup, eggs, egg whites, and vanilla extract until smooth.
  1. Combine wet and dry: Pour the blended mixture into the dry ingredients in the large bowl and stir until just combined—don’t overmix.
  1. Fold in blueberries: Gently stir in the blueberries using a rubber spatula to keep them whole.
  2. Portion the batter: Divide evenly between muffin cups, filling each about 2/3 full.
  1. Bake: Place in the oven and bake for 18–21 minutes, until the tops are golden and a toothpick comes out clean.
  2. Cool down: Let muffins cool in the pan for 10 minutes, then move to a wire rack to finish cooling.
  3. Store for later: Once fully cooled, transfer to a container for storage (details below!).
A plate of cottage cheese blueberry muffins, some whole and one cut in half to reveal the cottage cheese and blueberry filling, with a few blueberries scattered nearby.

Recipe notes and tips

  • Don’t overmix: Stir the batter just until combined to keep the muffins light and fluffy.
  • Use room temperature eggs: They blend more smoothly and help create an even texture.
  • Try frozen: Frozen blueberries are great—just thaw and pat them dry first.
  • Grab a spatula: A rubber spatula is perfect for gently folding in blueberries without crushing them.
  • Paper liners: I highly recommend using liners for this recipe, unless you’re using a silicone muffin pan. 
  • Let it rest: Letting the batter sit for 5–10 minutes before baking can help your muffins rise taller.
  • Test with a toothpick: It should come out clean or with a few crumbs—no wet batter.

Storage instructions

  • Room temperature: Store in an airtight container for up to 2 days.
  • Fridge: Keep in a sealed container for up to 5 days. Just let them come to room temp before eating for best texture.
  • Freezer: Freeze in a single layer first, then transfer to a freezer bag. They’ll keep for up to 2 months.
  • To reheat: Warm in the microwave for 15–20 seconds or pop in the oven for a few minutes to refresh that fluffy texture.

Variations

  • Lemon blueberry: Add lemon zest or a splash of lemon juice for a bright, tangy flavor.
  • Raspberry or strawberry: swap the blueberries for raspberries or diced strawberries.
  • Banana muffins: Swap blueberries for mashed banana and skip the cinnamon if you prefer.
  • Coconut sugar: Use it in place of honey or maple syrup for a different kind of sweetness.
  • Add oats: Stir in ¼ cup rolled oats for more texture and fiber.

What to serve with blueberry cottage cheese muffins

  • Breakfast: Greek yogurt with honey, a hard-boiled egg or protein shake, fresh fruit like orange slices or a banana
  • Snacks: A handful of almonds or walnuts, herbal tea or cold brew, cottage cheese with a dash of cinnamon
  • Brunch spreads: Mini frittatas or egg white bites, cottage cheese avocado toast with lemon and chili flakes, a light salad with lemon vinaigrette

Frequently asked questions

Can I make these muffins gluten-free?

Use a 1:1 gluten-free flour blend in place of whole wheat flour.

Can I reduce the sweetener?

You can! Try using ⅓ cup honey or maple syrup for a less sweet version, but it may affect moisture slightly. You could also try swapping the honey for sugar free syrup.

A close-up of a baked cottage cheese blueberry muffin on white parchment paper, with visible blueberries.

More cottage cheese recipes you will love

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A tray with eight cottage cheese blueberry muffins in white paper liners and a small bowl of fresh blueberries in the center.

Cottage Cheese Blueberry Muffins

Bethany Galloway
These cottage cheese blueberry muffins are soft, juicy, and sneakily packed with protein. Perfect anytime, you can eat them for breakfast, toss them in a lunchbox, or snack on them between workouts, without the sugar crash. Moist, fluffy, and full of blueberry flavor, they’re a solid win for anyone who likes their snacks to actually do something.
Prep Time 5 minutes
Cook Time 20 minutes
Total Time 25 minutes
Course Breakfast
Servings 12 Muffins
Calories 141
Protein 7

Ingredients

  • 1 ¾ cups whole wheat flour
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ½ teaspoon fine salt
  • ½ teaspoon ground cinnamon
  • 1 cup cottage cheese
  • ½ cup honey - or maple syrup
  • 2 eggs
  • ½ cup egg whites
  • 2 teaspoons vanilla extract
  • 1 cup blueberries - fresh, or frozen and thawed

Instructions

  • Preheat the oven to 400°F/200°C, and either grease a muffin tray or line it with muffin cases.
  • In a medium mixing bowl, whisk together the dry ingredients.
    1 ¾ cups whole wheat flour, 1 teaspoon baking powder, ½ teaspoon baking soda, ½ teaspoon fine salt, ½ teaspoon ground cinnamon
  • Blend together the wet ingredients. I did this in a jar with an immersion blender, but a food processor or standard blender would work as well.
    1 cup cottage cheese, ½ cup honey, 2 eggs, ½ cup egg whites, 2 teaspoons vanilla extract
  • Add the wet ingredients to the dry ingredients and mix until just combined.
  • Fold in the blueberries.
    1 cup blueberries
  • Divide the batter evenly in the muffin tin. They should be about 2/3rds full.
  • Bake in the preheated oven for 18-21 minutes, until they are golden on top and toothpick inserted in the middle comes out clean.
  • Allow the muffins to cool for 10 minutes in the tray before moving them to a wireless rack to cool completely.

Notes

  • Don’t overmix: Stir the batter just until combined to keep the muffins light and fluffy.
  • Use room temperature eggs: They blend more smoothly and help create an even texture.
  • Try frozen: Frozen blueberries are great—just thaw and pat them dry first.
  • Grab a spatula: A rubber spatula is perfect for gently folding in blueberries without crushing them.
  • Paper liners: I highly recommend using liners for this recipe, unless you’re using a silicone muffin pan. 
  • Let it rest: Letting the batter sit for 5–10 minutes before baking can help your muffins rise taller.
  • Test with a toothpick: It should come out clean or with a few crumbs—no wet batter.

 

Storage instructions

  • Room temperature: Store in an airtight container for up to 2 days.
  • Fridge: Keep in a sealed container for up to 5 days. Just let them come to room temp before eating for best texture.
  • Freezer: Freeze in a single layer first, then transfer to a freezer bag. They’ll keep for up to 2 months.
  • To reheat: Warm in the microwave for 15–20 seconds or pop in the oven for a few minutes to refresh that fluffy texture.

Nutritional Information

Calories: 141kcal | Carbohydrates: 27g | Protein: 7g | Fat: 1g | Saturated Fat: 0.4g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 0.4g | Trans Fat: 0.003g | Cholesterol: 28mg | Sodium: 283mg | Potassium: 125mg | Fiber: 2g | Sugar: 14g | Vitamin A: 56IU | Vitamin C: 1mg | Calcium: 44mg | Iron: 1mg

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